Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs11123765 chr2:99768064 T/C cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.57 0.86 1.0E-115 Box Plot
BLCA rs1125502 chr8:91674716 G/C cg16814680 chr8:91681699 NA -1.2 -34.42 -0.87 7.44E-119 Box Plot
BLCA rs11577007 chr1:227187440 C/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.72 -0.85 7.63E-109 Box Plot
BLCA rs11578103 chr1:227189642 C/A cg10327440 chr1:227177885 CDC42BPA -1.14 -31.56 -0.85 3.12E-108 Box Plot
BLCA rs11586604 chr1:227183865 G/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.65 -0.85 1.45E-108 Box Plot
BLCA rs11587443 chr1:227187896 T/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.65 -0.85 1.45E-108 Box Plot
BLCA rs11588904 chr1:227196211 T/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.89 -0.85 1.74E-109 Box Plot
BLCA rs11589344 chr1:227189408 G/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.43 -0.85 9.88E-108 Box Plot
BLCA rs11684598 chr2:33952621 G/A cg04131969 chr2:33951647 MYADML -1.24 -40.26 -0.9 3.94E-139 Box Plot
BLCA rs11685759 chr2:99766217 T/C cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.57 0.86 1.0E-115 Box Plot
BLCA rs11686191 chr2:30763821 A/G cg12454169 chr2:30669597 LCLAT1 1.25 30.86 0.85 1.44E-105 Box Plot
BLCA rs11689265 chr2:99799267 A/G cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.14 0.86 3.88E-114 Box Plot
BLCA rs11693427 chr2:99763326 G/A cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.57 0.86 1.0E-115 Box Plot
BLCA rs11695751 chr2:99708247 A/C cg15544633 chr2:99771531 LIPT1;TSGA10 1.19 33.21 0.86 2.02E-114 Box Plot
BLCA rs11777332 chr8:91676709 G/A cg16814680 chr8:91681699 NA -1.2 -36.65 -0.88 8.17E-127 Box Plot